rs33799646 SNP Detail

Summary

• ID
  rs33799646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:174420058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGATATG CAGCTGTCCT
  GAATAGGCAA GACTTAAACT CATTCACTCA TCTTCCCAAT GAGTGGGCTG CACATCTCTA
  ACAGGCAGAG GATGGCTGAG AGTCTTTATG TTTAGATTCC TAAATTTTCA CAGTAGCTTT
  ACTTAGAAGA TACTGCCCTC CAGCATGAAC AACAACAGCA ACAACAAAAT CAGCAACAAC
  Y
  GAATCTCTAG TCCTGTTAAT CGTAGTGTAT TTCCAGTATG ATCCCATAAG ATCTCAAATG
  GCTAGGAAGA CTGAAGGCGG AAAATCCCTT CAGAATCCAT TCTTACTCCT GCCTCTTGGT
  GGCAGTATTT GTCATCCCTC ACTAGAATCA GAACTGAATT TGTCAGTATT TAAAGCCTTT
  AAAATCCTGT GCTTCAAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49534530	NES12820180	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33799646					SNP	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49534530	NES12820180	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174420058 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	Intron
Rr423776	regulatory region 423776	108 bp proximal
Rr423777	regulatory region 423777	369 bp proximal