rs33799645 SNP Detail

Summary

• ID
  rs33799645
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:174420106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTCCCA ATGAGTGGGC
  TGCACATCTC TAACAGGCAG AGGATGGCTG AGAGTCTTTA TGTTTAGATT CCTAAATTTT
  CACAGTAGCT TTACTTAGAA GATACTGCCC TCCAGCATGA ACAACAACAG CAACAACAAA
  ATCAGCAACA ACTGAATCTC TAGTCCTGTT AATCGTAGTG TATTTCCAGT ATGATCCCAT
  W
  AGATCTCAAA TGGCTAGGAA GACTGAAGGC GGAAAATCCC TTCAGAATCC ATTCTTACTC
  CTGCCTCTTG GTGGCAGTAT TTGTCATCCC TCACTAGAAT CAGAACTGAA TTTGTCAGTA
  TTTAAAGCCT TTAAAATCCT GTGCTTCAAG ACTGAGGTGA TCCCATTATG TATGAACTGT
  CACTAAGTGA ATAATACAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49534529	NES12820185	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33799645					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49534529	NES12820185	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174420106 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	Intron
Rr423776	regulatory region 423776	60 bp proximal
Rr423777	regulatory region 423777	321 bp proximal