rs33792092 SNP Detail

Summary

• ID
  rs33792092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:25863966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAGATCC CAGTCCAGGT
  GACAAGTTGA CCAGGTGATA AAGTGTGACA GCATTAGACT TCAGCCACTG TAACTTCTGT
  CAACTTCTAG AAGCAGAAAG AGAGCTACAC AGTCCAGGAT ATATATATAG CCTGAGAAAA
  GCATGACACA CTGTGTTCTA CACAGCAGGT CCAGTTTCAT GAAGAATATC CATAAAATGA
  Y
  GACGAGACAT GCAGGATGAA GAGAGGAGTC TGGAAGGTCT ACCTTGAGAA TTCTATCTTT
  CAATATCAAT ATGGAAAAAT CATACAAGGA AACAATGATG TTGATCAGTA ACTATTAGTG
  GTCTCAAATA AACTGATTGC TTAATTATAA AGACCACACA AGACTTTGAG ACAGGAAATT
  CTAGGACACC AAGGTCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46859191	NES10838570	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33792092					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46859191	NES10838570	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25863966 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	Intron
Rr574296	regulatory region 574296	1781 bp distal