rs33791291 SNP Detail

Summary

• ID
  rs33791291
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:25862891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTAAAAA TGATCCAAGT
  TAGAAACCTA ATAGCTCACT ATTGTAGGCA GTTCATTTAT TGTTCATCAT TGTAAAACTT
  ATTTCCTTTC CCACAAATCA AGAACATAAA TATCCACATA ATATGTAGAT TTCCTTGGAT
  CATTATATAT TACTTATCAA AATTGAGGAA TTCTGTAATC TTAAGATGTT CAGTACAATA
  K
  AGATGCTGAA GTTGTTGGTG ATTTTGCATA AACAGAAAGA ATCTTGAAAA GGCATGATTC
  TATGACTTGG GTCTTGAGTG TATCTTAGAA AGACAATGTG GTTGTGTTCA ACCCCCAGTT
  TCAGTTTCTG GCACTATTGA GAGGGAAAGC TAGAAAGTGT AGGAGTTGGA GCATTGTGGA
  GGCACAAGTG GCACTGAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46859179	NES10838687	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33791291					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46859179	NES10838687	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25862891 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	Intron
Rr574296	regulatory region 574296	706 bp distal