rs33790396 SNP Detail

Summary

• ID
  rs33790396
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:25860763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATTTGC AGCAATGACA
  GAAATTTAAC TGTCTCTCCA GTTAGAGAGA AATGTACATA AGAAGGAATG AAGTGTTTCC
  CTTTGGGTCT TGAGATCTCT GCCATACTGT GATCATTAAG TGAAATGTAG CTAGCCCTTG
  CCAACATAGA TGTATAGTGG TTGTATCAAA TTCTGTAGCT TTATTTTTAA AATTTGTAAG
  K
  TGCTTTAGCT TTTTCTGGCA CAAAATTATG TATATACATA TATAATATAT GAAATATGTA
  TAGTCATATT CTGAATCAGA TATTTAAATG GTTGCATCAC ACTGAATTCT GTAAGTACAT
  TTCATTTATA AGCATGAGTT TGCCAGCTCC TTTGTTTAGC TTTAATGTGT ATATTATTCC
  AACGTAGGTT ATAGATGTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46859164	NES10838786	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33790396					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46859164	NES10838786	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25860763 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	Intron
Rr574296	regulatory region 574296	824 bp proximal