rs33790076 SNP Detail

Summary

• ID
  rs33790076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107571745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA GGGTTAACAA TAATTTTTTT
  Y
  CTTAATTAAA AGAAATAAAA CAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	MSM/Ms	PWD/PhJ
ss46858116	NES10701438	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	C		C
ss135585311	ENSMUSSNP6174292	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	MSM/Ms	PWD/PhJ
rs33790076					SNP	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46858116	NES10701438	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107571745 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahcyl1	S-adenosylhomocysteine hydrolase-like 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr35073	transcription start site region 35073			30 bp upstream
Tssr35074	transcription start site region 35074			645 bp downstream