rs33789220 SNP Detail

Summary

• ID
  rs33789220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:25743451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCTGCCT TTTCATCACA
  CAGTCAGCAT GACTTTTTTT GCTCAATCAA ACTTACCCCA ACTCAGATTG TTCCGTTGGA
  GTGGTCTAGC TGCTGCTGCT GCGATTTCCC AGCTATTAAC ACAGACATTA CAGCTCTCTA
  ACCACTCAAA GACTGCAGCA ACACAGCCAT CTTGGATGAC AGCCACTTCA GGGAGATCTC
  R
  GACAGATGGC TGTTTGCAGA GGGCAGAGAA ATTAACAGCA GTGCCTCTCC ACCCAGTGAT
  GATGTATTTC CACCTCAAAG GAAGGAACGG GCATTAATCC CTTTGAGAAT TCATGATACT
  CATTTTATGT CATGCTATTC ACATCTCATG GTTCATCCTT GCAAACAGCA AGAGGTGCCA
  GCAGATTTTG GAGCCCTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46858018	NES10844193	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33789220					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46858018	NES10844193	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25743451 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	Intron
Rr574294	regulatory region 574294	within coordinates