rs33786644 SNP Detail

Summary

• ID
  rs33786644
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:25741877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTTTTCC ATTCTCAGAG
  TTAGTAACTT CACTTGGGAA ATTCAGGTTT CTTTTATAGT GCTTGTTGAC TACATTCTTA
  AAGATGCATT TCTAACAAAG GGGGGGGGAA GGTAAGGGGA AGAAGAATTG GTATAAATAT
  TTTGTAATCT CAAAAATAAA AGAAAAATTA AGAAAAAGAG GTCATGAATT TAAGAGGGAG
  W
  AGGAGGACAA GAAAGTCATT GGGAGTTGAG AGAGTACTGT GGCAATGGTG TCAATACATT
  ACTCATGCAT TACAGTCACA CATGAAAAGA CCACTTACAC TGTTTTTCAG TTTTACTTTT
  AAATAATTCA GCATGGTTTT ATACTTCATT AGAATGAAAA ATATAATTAC ATGGAATGAT
  CTGGGGAAAG CATTTCTAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46857982	NES10844181	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33786644					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857982	NES10844181	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25741877 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	Intron
Rr574294	regulatory region 574294	1373 bp proximal