rs33782838 SNP Detail

Summary

• ID
  rs33782838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:25744634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACTGAGA TTTTTCTATT
  AAATAAAATC ACATTTAAAT ATACTGACAA TAAAAGCATA CAAATACTAA GGTCCTTTTT
  TCGTTAACTG ATTAAAAACT CCTACGATTA TTGGTACTAA CAGTACATCA AAATACTCTC
  ACCGGCATGA CGAGAACTTC CCCTAATGTA CCTTTCCACA TTCTTAATGA TTTCAGAGGA
  Y
  AACAGCTAAT GTGCAAATTC AGATGAGGAT ATGAAACTTT GTACTAAAGA AGTAAGAAAT
  ACTCTATATC AAATGAATAT TCCTCCAGGA GATAAGATCT TGAACCATTA TTTCCATAGT
  TGCTGGCTTG TTCTCCTTTG TTCCTTATCA ACAGCAATAC TCTGACTCCC AACCACAGGA
  TAGACCCTTC ATTGATTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46858036	NES10844061	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33782838					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46858036	NES10844061	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25744634 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	Intron
Rr574294	regulatory region 574294	1006 bp distal