rs33782138 SNP Detail

Summary

• ID
  rs33782138
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:27350114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCAAAAT TTTCAGATTA
  CCTTAAGGAA TCATGTGTGC AATTCTTAAA AAGTAATTTT AAAAAGGTAA TAAGAAAGCT
  AGATTTATAT ATTAGTTGGC AAAATTATAT AAAAATAAAA ACATTAGAAA GAAAAACAGT
  AAATGCCAAA ATTTGGCAAG GGCAAATAGA GAAAGTCAAG ATGACCCTAA AATTTCCCCA
  W
  CATCATTTAT TATTCAAGTT TTTAAATAAA AACAATAGTA TCTATTCGGA TATGATTTAT
  CTCTTAGAAA TAATTTGACT GCCTTTTATT GTAAATAAGG TTTAATTCAT AGAACATATT
  ATAATCACAG TTTCCCCTCT CTGTCTCCTT CCCGATCATC CCTATCTACC CACCCACCCA
  ATATCATGAC TTCATTATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47842858	NES11671471	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33782138					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47842858	NES11671471	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:27350114 () rs orientation: forward

Symbol	Name	Function Class
Grm8	glutamate receptor, metabotropic 8	Intron
Rr379108	regulatory region 379108	968 bp downstream
Rr379109	regulatory region 379109	670 bp upstream
Rr627321	regulatory region 627321	1476 bp distal
Rr627322	regulatory region 627322	1104 bp proximal