rs33782008 SNP Detail

Summary

• ID
  rs33782008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107467327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAATGCT TCCCTACCTC
  CAAGGTGACT CTTCATGTGA AGATTATGTC ATCAGCCACA GTGGCAGGAA TTCTCTGCCC
  TGAAGCTTTG TGGATGAAAT GTGATAAAGT AAACTCAAGA GTAAAGAAGA TGCCCATAGA
  ACTAACGGGG TGCCCACCCC TCTCCACCCC CCCCCCAACA TCCAGATCCA GGATCATAGA
  Y
  TGAGCAACTG CGGGCTTGAG CTCATCTCTA GAATTTGCAG TTGGTTTAGA TAAGAGCAAC
  TCATTAAGGT CTGACAGTGG GTCGGTGGCC AGGGAATAGA TAGCCTGGCT AAACCCAGGC
  TGAGTTCCCA AGCTCGCTGG CTACCTGGTA GGATGGCTGC TGTCCATCAG ATGTCAGGCT
  CAGCTGGGAT GGGAACATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46857276	NES10705701	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33782008					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857276	NES10705701	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107467327 () rs orientation: forward

Symbol	Name	Function Class
Gm65374	predicted gene, 65374	657 bp upstream
Rr582999	regulatory region 582999	681 bp distal
Rr583000	regulatory region 583000	351 bp distal
Rr583001	regulatory region 583001	635 bp distal
Rr583002	regulatory region 583002	335 bp distal