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rs33781306 SNP Detail
Summary
  • ID
    rs33781306
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:27349829 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATAGGCAATA CTAAGACTCA
    GCAGGTTACA TTTATCATTT ATATACTTAT AAACACACAT ATAAATGTAT GTATATATAA
    AGATTAAGAG ACCATGACTT AAAATAAATA GGGAGAATAT GGTAGACTTT GGAGGCAGAG
    GATTAAAGAA GTAATTATAT TTTAATTAAA TAAAAATGAT ACTAACCTAA TTTACTTAAA
    R
    CCAATAAAAA TGCAAACTTG TAATTGGATG ATTTTACTTA TTGGTTTAGA ACTGACCTGT
    TCACAGAGTT CAGAACACTG CCAAAAGGCA AAATTTTCAG ATTACCTTAA GGAATCATGT
    GTGCAATTCT TAAAAAGTAA TTTTAAAAAG GTAATAAGAA AGCTAGATTT ATATATTAGT
    TGGCAAAATT ATATAAAAAT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss47842846 NES11671465 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A A A A A A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33781306 SNP A A A A A A A A A A A A A A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47842846 NES11671465 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:27349829 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Grm8 glutamate receptor, metabotropic 8 Intron
Rr379108 regulatory region 379108 683 bp downstream
Rr379109 regulatory region 379109 955 bp upstream
Rr627321 regulatory region 627321 1191 bp distal
Rr627322 regulatory region 627322 1389 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory