rs33778705 SNP Detail

Summary

• ID
  rs33778705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107469479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTTGTAA GAGGGGAGAG
  AATAACTCGT TGACCTTGAG GCTTCTGCTG TAGGTTTAAA TTCACAAATA TCACATTCCT
  GTTGGGTGCT ATAGGAAGGC AGCCTGACAG TCTCTTACTC ATAAGTTGTG ATGGAGCTGA
  CCCTCCCAGG AGTGCCTCAG TGCTGGCATT TGATGCTGAG AATGGGTAGG GGCCATGAAA
  Y
  GGTATCTCCC GTGAAGCATC GGCTCACAGT GCAGTCTGTG CACTTCCCAC TCTGTCCTGT
  GAGCTCTGCC CATGTCTTGG GTCTCCTTCC CTGTGGCTGT GGATGCCACT GACCTGGATT
  CATCTCATTG CCTTGGTCAG CAACACTGCC CCTCCTGGGT GGGGATGGGG GTTACAGGCT
  GGTTCAGGAT CTCAAGGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46857333	NES10705734	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33778705					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857333	NES10705734	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107469479 () rs orientation: forward

Symbol	Name	Function Class
Rr583003	regulatory region 583003	1596 bp proximal