rs33778679 SNP Detail

Summary

• ID
  rs33778679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107572768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTAGTTC TTTACATTTA
  TTGGTAGATA CACATTTTCT CTGACTACCT TGTTAATTTG GTTTTCTGTA GAGCTGGGGA
  CTGAACCTCA CTATACTAGG CAAGCATTCA ATATTGAGCA GCCTAGTCAT TGCCCTGCTA
  ACCTGCTGTG GTGACCTTAT ACTCATAAAT ATCAGACATG ACACTTATCT TTACTGAAGA
  R
  ACCTGGCTAA ACTGGTTGGT CTAACATTGA AGAAGAACTT TTCATTGCTT TCTTTCAAGT
  TACCTGTAAT AATTAGGTTT GAATGGCCCA TTTTTGTTGA GTCCCAGATA CTTTGCTTGG
  TCATCTGTCA GTTCTGTCAG GTGGGCATCA AATGATGGTA AGTGCAAGCT GGCAACATAT
  TCATCTGGGA AGAGGAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46858137	NES10701374	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33778679					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46858137	NES10701374	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107572768 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahcyl1	S-adenosylhomocysteine hydrolase-like 1			Intron
				Noncoding-Transcript-Variant
Tssr35073	transcription start site region 35073			1053 bp upstream
Tssr35074	transcription start site region 35074			333 bp upstream