rs33775459 SNP Detail

Summary

• ID
  rs33775459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107348376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAGCTGT AGTTGAACAG
  TTGCCTTCCC ACTGGTGGTC TGTCACAGCC ACCTGTCTTA AAGGTTGAGC TGTGAAGCTA
  ACTCTAGGGT TGTCAGTAGT ACTGGCACAG ACTGGAAGGT AAGGCTAGGA GTTCGTTCCT
  GGGCTGCCTG CTTGCCCTTT AAGAAGGGGC CCGGCCCCCA GCTACAGGGC CAAGTTTCTA
  R
  AAGCCAAAGC AACAGATCCA ATTCCAAGTC TGCCCCAAGG AAATGTTAAC TGTGTCCTCA
  GACTCTGGGT GGGACAGACT TTTCTGCTAG TGAAGAAGAT TCAAGGCCTG GATGGGCCTG
  AGGCTGTACT GTACCTCTTA GGCTGGGGAC TAGTATATAT GGAGGTTATG TCCATGATGC
  ATTCCTTCTT TCCTAGGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46855608	NES10710843	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	A	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33775459					SNP	A	G	G	G	G	G	A	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855608	NES10710843	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107348376 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A330043J11Rik	RIKEN cDNA A330043J11 gene			within coordinates
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4			Intron
				mRNA-UTR
Rr582974	regulatory region 582974			1572 bp distal