rs33773512 SNP Detail

Summary

• ID
  rs33773512
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107347627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCACAAC CTCAGCCTCA
  GATATCCGAG ATCCGAGGCT TGTGTCTTTG CCTATTTTCC AGAGGTAGCA CTAGCTAGAT
  AGCTAGGGAG ACTGGGCTAA TAGTATGGTG GAAGTTTCAG CCTCCCAGAC TGACTACTAT
  AGCTAATAGG TTTACAGTTA AAGGTGGACA TGTTACTTGA CATTCAACTC TGGGGTTTCC
  Y
  GGCATGTTAA AAACTTTTTT TTTTTTTCTG CTAAAACCAT GTTTTCATCT CAGAGTGACC
  TGTTACCATC TCCTTAAGAC TCTGGCCCCA ACTCTCCTCC TTAAACGCTG CCCCTTAGCC
  TTTTACGGTT CCTGCCTCTG AGTTGTATCC CTCAGGAAAC CACAAGGGGA TGACTTAACT
  CAGAGGATAA GACCTAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46855590	NES10710837	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33773512					SNP	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855590	NES10710837	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107347627 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A330043J11Rik	RIKEN cDNA A330043J11 gene			30 bp downstream
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4			Intron
				mRNA-UTR
Rr582974	regulatory region 582974			823 bp distal