rs33773495 SNP Detail

Summary

• ID
  rs33773495
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107352392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCAAGGT CAAGTGGGAT
  CAGAAAACAC AGAGAGGACA AGGGTCTGGT CTTGAGCCTC GTGGTTCTCA GCCATCATTG
  GCCCTTGTCA TCCTAATGGC TTCTGTGTCC CTCTCTCCAT TAAGGCTAAG TAAGAGTCCC
  TAGCTGCACA GCCCGACTTC AGCTCTGTCT CTGCCATGCA CTGGGAGAGT CTGTTTCCTT
  R
  AGGGAAGCTT TGGCAGTGTT TAGGAGGTCT AGGGAAGTGG CTGGGTACGA CCCTGTGGGC
  TAGGCCTAAC GGCTGCGGCA GGACTAGAGT GGGGGAGGTG AAAGAGTGTG CTCTCAAAAG
  TCTAGTATTG TGTGGATACC TTTGAGGGAG GGGCTCCACA GGGAATGCTA GAGACCTTTT
  TAATCCAGAC ACTGGCAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46855659	NES10710860	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33773495					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855659	NES10710860	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107352392 () rs orientation: forward

Symbol	Name	Function Class
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	Intron
Rr582975	regulatory region 582975	1824 bp proximal