rs33766576 SNP Detail

Summary

• ID
  rs33766576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107286832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACTGCAGG GCACAGACCT GAAAATCCAG GGAAGCTCAG
  TGAAAGCCCA GCTTCCTGGA CTGGGACCTG AGAACCAACC GAGGGAGGCT CATTTGAATG
  Y
  ATCCTAAGCG TCCCAGAAGG AAACCACCTC TGCAATCCGG TTTTGACCCA CAGCCAATTT
  GAGCCCTGCT GCTCCCCCTA GCGGGAGAAG GAAGCAGTGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46854864	NES10713667	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33766576					SNP	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46854864	NES10713667	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107286832 () rs orientation: forward

Symbol	Name	Function Class
Gm40120	predicted gene, 40120	1293 bp upstream
Rr582964	regulatory region 582964	within coordinates
Rr582965	regulatory region 582965	68 bp proximal