rs33761040 SNP Detail

Summary

• ID
  rs33761040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107135918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTGTTA GATCCTTACC
  TGAAGATGTT CAATAACCCC ATGTCAGTGA AAAAAACTGC TCACCACCAC CTACTTACAT
  CAATTAAGGA GTGTTTTTTC CTAAGATGTA TATGTGTTTA AAATATCAAA TATTTAATCT
  CTAACAACAT TAATTGATAA CAATGTTTGT TTCCCTCCTA ATGTTGTAGC TGATATCTGG
  Y
  GTAAGTACTT TGAAGCTAAT GTTTGCTGCC CTGTGGGAAT TGAAAACAGC CTTGATTACA
  ATCATCACCC TGAACTGAAT GGACAGACCC CATGGGGCAC TGCACAGCTT GGAGGGGGTG
  GCCACAAGAA GTACTGGATG GGATGGGTCT ATCTGGGACA AAGTCTAAAA CATTAAAGCA
  AAACAGAAGT TCAGATGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46853310	NES10695795	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33761040					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46853310	NES10695795	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107135918 () rs orientation: forward

Symbol	Name	Function Class
Rr582941	regulatory region 582941	702 bp proximal
Rr582942	regulatory region 582942	1522 bp proximal
Tssr31190	transcription start site region 31190	1854 bp upstream