rs33759180 SNP Detail

Summary

• ID
  rs33759180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23278307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTAATAG AAACAGAATT
  TAATAGGGAC CTATTAAATT GCTCCATTGG TAGAGTGCTA TTTCTGCATG CATGAAGCCC
  TGGGTTCGAC CCTTGTACTG CAAAAATCCA ATAGGCATTA AAATGGTTGG AGTTATCAAG
  GAGATAATTG TATTCACCTG ATGGTACAGA GTAGTAAAAT GGAGCTTAAA TGGTGACAGT
  Y
  GTTTCACATT AGCTGATGAC TGAAGCAGAA GTATTACAAA CTAAAAAAAA TTCCATGCCC
  ATTTATGGTC AGTCATACAC GGAGTTACAC TATCACTGTG TGCTAAGGTG TGTTCAGCGC
  TGGACTGGCT TTAAGACAGT CACCCAAGTA TCAAACTGAC TCTCCAGAAA GCTTATGGGT
  ACCCAGAGAC CTGCTCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47838370	NES11693663	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs33759180					SNP	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47838370	NES11693663	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23278307 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cadps2	Ca2+-dependent activator protein for secretion 2			Intron
				Noncoding-Transcript-Variant
Rr627172	regulatory region 627172			1739 bp proximal