rs33756177 SNP Detail

Summary

• ID
  rs33756177
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107183570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGCAGA ACTGGGCTAA
  GGGTAAAGCT CAGGCATAGA GTACTTACCT AGCCTGAGTA AAGTCCTAGG TAAGCCAGAT
  GCTTGGCGCT TAACAGAACA AGACAGAATG GTCAAACCAA GCGGTCTCAA TTCAGTAACA
  TTTTTACCAC TTGAGACCAC AGGGAGGCAG AGCTGATACT GTTCCCTTAG GCATAGTGTT
  W
  GCTTTCTCTT AAGACAACTG GGGCAAACTT TACTTTGAAT AGTATCTAAT AGGTTTTTAA
  ACACCTAGCC CAGCCTCCCA AGTACTGGGA TCATCAGCAT GCTCTCTGCT ACGCAGCTCT
  AACGCTATCT TTTAAGGGTA TCTCTAGAGT GCTGTTCTAA AATCTGAATA GCCCACATTG
  TGTTACCTGA TAACTCAGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46853835	NES10719266	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A		A	A	A
ss320865181	CHEV_3_107079172	CHEVERUD	SCREENING_POP	f	SNP										A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs33756177					SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46853835	NES10719266	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107183570 () rs orientation: forward

Symbol	Name	Function Class
D3Tem1	DNA segment, Chr 3, Temple 1	1813 bp proximal
Rr582951	regulatory region 582951	1994 bp distal
Rr582953	regulatory region 582953	27 bp distal