rs33755542 SNP Detail

Summary

• ID
  rs33755542
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107137417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCTGCTG GTAACCCCAG
  AATCCACCCT GTGCCCCTTG ACATAGCTGG AAGCTGCCAG GGAGGCCTAT GCCAGGGAAT
  GTATGCTCCT GATACAGTTA TTCTGCCCAG AGTCTGGGGA AAGCCAGGGC AGACCAGAGT
  CCACTGTGCA GACAGCTCTG TGCTAAGATC CCAGACAGAG CAAACACTGT ACCTCACTCA
  B
  GATCGATGCC TCTCAGTTTA ACAGGGTCTC AGGGAGATAC GGTTAGTGTG TTTTTCTTTC
  TAATCACAGC TGTTATCAGG CTCCGCCTCT AGGAACCTGT GTGTGAACTT GAACTTGGCA
  AGGAATGAAC ATTGACTGAA CACACAGGGG TTTCTTGCTG TTAAGTTACT ATTTGGGGCC
  TTTGAAAGGC ATCCAGAAAG                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46853340	NES10695417	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	G		C
ss320864774	CHEV_3_107033019	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33755542					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46853340	NES10695417	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107137417 () rs orientation: forward

Symbol	Name	Function Class
A630076J17Rik	RIKEN cDNA A630076J17 gene	513 bp upstream
D3Tem2	DNA segment, Chr 3, Temple 2	1343 bp proximal
Rr582941	regulatory region 582941	588 bp distal
Rr582942	regulatory region 582942	23 bp proximal
Rr582943	regulatory region 582943	524 bp proximal
Tssr31190	transcription start site region 31190	355 bp upstream
Tssr31191	transcription start site region 31191	507 bp upstream