rs33755539 SNP Detail

Summary

• ID
  rs33755539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107137403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAATGCA AATGAATCCT
  GCTGGTAACC CCAGAATCCA CCCTGTGCCC CTTGACATAG CTGGAAGCTG CCAGGGAGGC
  CTATGCCAGG GAATGTATGC TCCTGATACA GTTATTCTGC CCAGAGTCTG GGGAAAGCCA
  GGGCAGACCA GAGTCCACTG TGCAGACAGC TCTGTGCTAA GATCCCAGAC AGAGCAAACA
  Y
  TGTACCTCAC TCACGATCGA TGCCTCTCAG TTTAACAGGG TCTCAGGGAG ATACGGTTAG
  TGTGTTTTTC TTTCTAATCA CAGCTGTTAT CAGGCTCCGC CTCTAGGAAC CTGTGTGTGA
  ACTTGAACTT GGCAAGGAAT GAACATTGAC TGAACACACA GGGGTTTCTT GCTGTTAAGT
  TACTATTTGG GGCCTTTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46853337	NES10695416	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C	C		C
ss320864773	CHEV_3_107033005	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33755539					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46853337	NES10695416	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107137403 () rs orientation: forward

Symbol	Name	Function Class
A630076J17Rik	RIKEN cDNA A630076J17 gene	527 bp upstream
D3Tem2	DNA segment, Chr 3, Temple 2	1357 bp proximal
Rr582941	regulatory region 582941	574 bp distal
Rr582942	regulatory region 582942	37 bp proximal
Rr582943	regulatory region 582943	538 bp proximal
Tssr31190	transcription start site region 31190	369 bp upstream
Tssr31191	transcription start site region 31191	521 bp upstream