rs33755536 SNP Detail

Summary

• ID
  rs33755536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107137369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGTCAT AGCTAGAGAG
  CTGGCGAGGG GCCAGAAAAA TGCAAATGAA TCCTGCTGGT AACCCCAGAA TCCACCCTGT
  GCCCCTTGAC ATAGCTGGAA GCTGCCAGGG AGGCCTATGC CAGGGAATGT ATGCTCCTGA
  TACAGTTATT CTGCCCAGAG TCTGGGGAAA GCCAGGGCAG ACCAGAGTCC ACTGTGCAGA
  Y
  AGCTCTGTGC TAAGATCCCA GACAGAGCAA ACACTGTACC TCACTCACGA TCGATGCCTC
  TCAGTTTAAC AGGGTCTCAG GGAGATACGG TTAGTGTGTT TTTCTTTCTA ATCACAGCTG
  TTATCAGGCT CCGCCTCTAG GAACCTGTGT GTGAACTTGA ACTTGGCAAG GAATGAACAT
  TGACTGAACA CACAGGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss46853334	NES10695415	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C		C
ss320864772	CHEV_3_107032971	CHEVERUD	SCREENING_POP	f	SNP											C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs33755536					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46853334	NES10695415	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107137369 () rs orientation: forward

Symbol	Name	Function Class
A630076J17Rik	RIKEN cDNA A630076J17 gene	561 bp upstream
D3Tem2	DNA segment, Chr 3, Temple 2	1391 bp proximal
Rr582941	regulatory region 582941	540 bp distal
Rr582942	regulatory region 582942	71 bp proximal
Rr582943	regulatory region 582943	572 bp proximal
Tssr31190	transcription start site region 31190	403 bp upstream
Tssr31191	transcription start site region 31191	555 bp upstream