rs33754713 SNP Detail

Summary

• ID
  rs33754713
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107137069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTGTTT TTTTTTTTGG
  TTTTGTTTTT GTTTTTGTTT TTTAACATGG GAATCAAAAT CTTGTCCCGC TTGCCCAGTC
  CAGGTAGACA AGACAAGCTA GGCTGGCAGC CATGATGATA CTTGTTCAAT ATGAAGTCCA
  CACTCTACAT AGACTGGAGG GTTAGCTAAT GGGAGCTACC TCTCTTTGCA AAGCAGTGTT
  R
  ATTTTTCGTT ATTTGTTGAA TTAGTTTCCT CCAATGGTTG GGTTGACTGA CAGGCTGAGG
  TGGGGCTTCT AAGAAGGTAA AAGGTACAGA AGTCTCATGT GGGAGTCATA GCTAGAGAGC
  TGGCGAGGGG CCAGAAAAAT GCAAATGAAT CCTGCTGGTA ACCCCAGAAT CCACCCTGTG
  CCCCTTGACA TAGCTGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46853331	NES10695414	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33754713					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46853331	NES10695414	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107137069 () rs orientation: forward

Symbol	Name	Function Class
A630076J17Rik	RIKEN cDNA A630076J17 gene	861 bp upstream
D3Tem2	DNA segment, Chr 3, Temple 2	1691 bp proximal
Rr582941	regulatory region 582941	240 bp distal
Rr582942	regulatory region 582942	371 bp proximal
Rr582943	regulatory region 582943	872 bp proximal
Tssr31190	transcription start site region 31190	703 bp upstream
Tssr31191	transcription start site region 31191	855 bp upstream