rs33754710 SNP Detail

Summary

• ID
  rs33754710
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107136709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTGTGT GTGTGTGTCT
  GTGTCTGTGT GTCTGTGTGG TGTGTGCACT ATTGTGTTCA TGGAAGTCTG AGAACGACTT
  TCAGGGGTTG ATTCTCTTCC AACCATCCTG TGGGATCCAA GGTGTAAACT CAAGCTATCA
  GACATGCATT CACACGCCTC TACTCATTGA CCTGTCCCGC CAGGCCTCCG CTTTGTTTAC
  R
  AAGCAGGATT TCTCACTCTT ACCTGGAGCT TGCTGATTCA GCTTGGCTGA CTGGCCAGCT
  AGCTAGCCCC AAGGGTCAGC CTGCCTCTGC ATCCCCACCA CTGAGGCCAT AGGCATTCAT
  CGTCACACCC AGCTGCTGTG GTTGTGTTTT GGGTTTTGTT TTTTTGTTTT TTTTTTTGGT
  TTTGTTTTTG TTTTTGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss46853328	NES10695413	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		A	G
ss320864769	CHEV_3_107032311	CHEVERUD	SCREENING_POP	f	SNP						A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs33754710					SNP	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46853328	NES10695413	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107136709 () rs orientation: forward

Symbol	Name	Function Class
A630076J17Rik	RIKEN cDNA A630076J17 gene	1221 bp upstream
Rr582941	regulatory region 582941	within coordinates
Rr582942	regulatory region 582942	731 bp proximal
Rr582943	regulatory region 582943	1232 bp proximal
Tssr31190	transcription start site region 31190	1063 bp upstream
Tssr31191	transcription start site region 31191	1215 bp upstream