rs33754698 SNP Detail

Summary

• ID
  rs33754698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23246404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTTCAG GGCATTGATT
  CTTCTACGTT TGTTTTTAAG CACACTGAAT TTATTTCCTC TACATATTAA TAGACATTAT
  TTATCCAGTT ACACTAACCG AAAACTGGAG GTGGCAAAGA AACACCCTTT GACATATCAA
  ACGTGCCTTT TCTTACACTG GTCAGACCAG ATAGTAGGGA ATAAAATTGA CAGTCTTCTT
  Y
  GGCTCAGGTA AGCAGGTACA CTTTAGAGGT CATTAAAAAA AAATCCCGAG AATATCCAGT
  ATAACTTTCC TATGACCACC CTGAGAAAGA CATCTCCTGT GCTCAATACC TTTTTGATGA
  AATCCTTTGC CGCAGAATTC ACACACGAAT GGTTTGTAGC CCGCGTGAAT TCGGGTATGT
  GTGTTTAACG TGGAACTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47838048	NES11695192	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33754698					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47838048	NES11695192	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23246404 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17196	CpG island 17196	437 bp distal
Cpgi17197	CpG island 17197	901 bp proximal
Fezf1	Fez family zinc finger 1	Intron
Rr627164	regulatory region 627164	1947 bp proximal
Tssr59962	transcription start site region 59962	1966 bp downstream