rs33751298 SNP Detail

Summary

• ID
  rs33751298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100689125 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  GTACTCCATT ATGTAAATGT ACCACATTTT CAGTATCCAT TCCTCTGTGG TGAGACATCT
  GGGTTTTTTG GTTTTTTGTT TTGTATTTTT TTCCCCCGGC TTCTGGCTAT TATAAGTAAG
  GCTGCTAAGA ACATAGTGGA GCATGCATCC TTATAACATA TTGGAGCATC TTCTGAGTAT
  ATGCCCAGGT GTGGGATAGC TGGGTACTTT GTCCAGTTTT CTGAGGAACC ACCAGACTGA
  TTTTCAGAGT GGTTGTACCA GCTTGCAATC CCACCAACAA TGGAGGAGTG TTCCTCTTTC
  Y
  CCACATGCTC ACCAGCATAT GCTGTCACCT GAGTTTTTTA TCTTAGCCAA TCTGACTGGT
  GTGAGGTAGA ATCTTAGGGT TGTTTTGATT TGTATTTCCC TGACAACTAA GGATGTTCAC
  CATTTTTTTA GGTGCTTCTC AGCCATTCGA GTTTCCTCAG TTGACAATTC TCTTTAGCTC
  TGCTCCCCAT TTTTAATAGG GTTATTTGAT TTTCTGGAGT CTACCTTCTC GAGTCCTTGG
  ATATATTGGA TATTAGCCAT CTATCAGATG ACTGGTTGGT AAAGATCTTT TCCCAGTCTG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45817375	mCV22931354	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33751298					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100689125 () rs orientation: reverse

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	1780 bp proximal