rs33749211 SNP Detail

Summary

• ID
  rs33749211
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107114763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGGCTT GTCCCTCAGG
  GGAAAAGGAT GGGCCAACAG AGGCACCCCC TTCCCCACAC CTGACTGTAC CTTCACCAAA
  TGTATTCCTT CTCTCCCTTA TCTTTTTATA AAACACACCA ATAACCACAT GCACTTCCTG
  CTTGCTTGAT TTGGGGTGTT TTCTTTTGTC TAATTTGCAG CACTGAGAAT CGAAGCCAGG
  W
  CCTTGTGCAT TCCAGGAAAA CACTAGATAA GGAGCTTTGC TTCCAGATGC ATTCATATGT
  CTGTGTGTCT ACAAAAGAGA CCACATAGGA GGTCCTTTCT CTGTGCTTAC TAATGGACAC
  AGTGCCTAGA GCAGTGTGTC CCATTCTAAA ATGACAAGTG ACAACTTAGG GGTAGGACTC
  AGCCATCAGT TATTCCTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46852794	NES10696207	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33749211					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46852794	NES10696207	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107114763 () rs orientation: forward

Symbol	Name	Function Class
Rr582930	regulatory region 582930	1138 bp distal
Rr582931	regulatory region 582931	1247 bp distal
Rr582932	regulatory region 582932	299 bp distal
Rr582933	regulatory region 582933	277 bp proximal