rs33746638 SNP Detail

Summary

• ID
  rs33746638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107113494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGAAAA GCTAATCAGA
  GATATCTGGA GTTATGGGGT CGAAGACTGG GACTCCTTTT TTATCTGTGT CCTGAAGAAG
  CTGCCACTAT GCTTTGCATG AGGGAGACAG TCAACTCTAT TGTCTACTTG ACCACTGCCC
  CCAAAGTCAC CTGAAGTGGC CAAGAATGTC CCAAGGTATA AACAAGATGC TCTAAGTTGG
  Y
  CTGGTCACTA GAGGGCGCTC CAGGACTAGA GCTGCCTCCT GGGCTGGAAA ATTGAAGATC
  CTGTGTTTGT TTATTCACTC AACATTAAGC ACATTAATAC AGAACAATTC TATGCCAACG
  CTAAACGCTA TAAAGAGTTG GAAATGACTC ATCTTTCATT AGAAAGCCAG AAAATATGAA
  AAATAAATAG TGTATTCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46852761	NES10696190	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33746638					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46852761	NES10696190	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107113494 () rs orientation: forward

Symbol	Name	Function Class
Rr582930	regulatory region 582930	within coordinates
Rr582931	regulatory region 582931	1 bp proximal
Rr582932	regulatory region 582932	314 bp proximal
Rr582933	regulatory region 582933	1546 bp proximal