rs33744197 SNP Detail

Summary

• ID
  rs33744197
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107112047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGTAGGA TGTCACTCCA
  AGCAAACATC TCTTCTAGGA TGCAGGACTT GACAGAAAAA ATTGTCCAGG AGACATATGT
  GCAAACACCC ACTAGACTCC ACAGGGATTG ACTTGCAAGC TACAGAAGCT CTTCTTGTCC
  CTCTTGAATC CAAATAAATC CTACAAGGCT GGTTCAGATC TACAGCCAGG CTGGCATCCA
  R
  TGATGGGCAT GTCCATGTGG AGTCTTATGT CCAGTTCCTC TGACTCTGGC GAAAGACAAT
  TTCTTTAGAG TCCAGATTTC TAATCTCATT TGTCTCTGTT GGCTGTGCGG AGGACTTCTG
  GGCATCCTGT GGACTCAGGA AAACACTTTT CTCTATTATT TACTTATTGT CCTCACACGT
  GGAGAACATG CGCTGAGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46852725	NES10696178	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33744197					SNP	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46852725	NES10696178	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107112047 () rs orientation: forward

Symbol	Name	Function Class
Rr582930	regulatory region 582930	1224 bp proximal
Rr582931	regulatory region 582931	1448 bp proximal
Rr582932	regulatory region 582932	1761 bp proximal