rs33744041 SNP Detail

Summary

• ID
  rs33744041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:105347652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG ATGAATAAGC ACAATCATAA
  Y
  CCTATAAAGT CATTATGTTA ATTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46312976	mCV24347287	ABI	CRAMUS_MOUSE	f	SNP	C	C					T		C
ss50792617	NES14216531	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T	C	T	C		C	C	C		T
ss136917781	ENSMUSSNP214009	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss323176247	CHEV_9_105372783	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33744041					SNP	C	C	C	C	C	C	T	T	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50792617	NES14216531	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:105347652 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp2c1	ATPase, Ca++-sequestering			Intron
				Noncoding-Transcript-Variant
Gm19667	predicted gene, 19667			67 bp upstream
Tssr86838	transcription start site region 86838			35 bp upstream
Tssr86839	transcription start site region 86839			61 bp upstream
Tssr86840	transcription start site region 86840			82 bp upstream