rs33743594 SNP Detail

Summary

• ID
  rs33743594
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106972346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTGAA TTTGCATGAA
  CTACTAAATT AATAGTTCTT ATTTATCAGA TCCCTATAAC CAATAACAGC ACCATTGTAA
  GACCTTACTA GAGCCCCAAA ACAACACTAA AACACAGATC CTGCCACCAT CACCCCCACT
  TTAGAGATCT GGAGAAGGTA AATAACCCTC TTCAAGTCAG GAGACAGTAA CTGAGCAGGA
  W
  TGTAGAGGTC ATGAAGTCAT GTCACCACCA AGTGCTTAAA ATACAGCATG TCTGCTTCTC
  AGAATAATCC AGCAAGGGCC CTGGTGAGAT GGATAGGTAC ATACTGCACA AGCTTGAGAA
  CATAGGTCCT ACAGCCAGCC TCCATGTCAA AGCCAGGAAG ATAGGCATCA ACCTATAGTC
  CCAGTACTGA GGAATTAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46850902	NES10702261	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33743594					SNP	T	T	T	T	T	T	T	T	T	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46850902	NES10702261	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106972346 () rs orientation: forward

Symbol	Name	Function Class
Gm38712	predicted gene, 38712	within coordinates
Rr582892	regulatory region 582892	1931 bp distal
Rr582893	regulatory region 582893	133 bp proximal
Rr582894	regulatory region 582894	1630 bp proximal
Tssr35010	transcription start site region 35010	1682 bp downstream