rs33742302 SNP Detail

Summary

• ID
  rs33742302
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118406632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTCTCAGC ACCCACACGG TGACTCACAG CCATCTGTAA
  GTCGATCGGG TTCCAATACT CTCTTCTACC CTGTATGTAC TAGGCATGAA CATGGTAAAC
  M
  CACATACATG TAGACAAAAG ACCATACCGA TAAAAATAAA TCTTTGAAAT TTCAAAATAA
  AAAAAGGTCC AAGGCAGGCT CCAGGGACCA ACATCTTTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45815882	mCV23380124	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C	A
ss149162391	ENSMUSSNP2007199	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss321662384	CHEV_5_118718576	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33742302					SNP	A	A	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118406632 () rs orientation: forward

Symbol	Name	Function Class
Gm25076	predicted gene, 25076	1987 bp downstream
Gm73266	predicted gene, 73266	676 bp upstream
Rr618848	regulatory region 618848	258 bp proximal
Rr618849	regulatory region 618849	627 bp proximal
Rr618850	regulatory region 618850	698 bp proximal