rs33741488 SNP Detail

Summary

• ID
  rs33741488
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119449965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT ATGACACTAC CTTCACTCTC
  R
  TGAACCTTTA ATGGGATGCC TGTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45316134	mCV22553842	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147337176	ENSMUSSNP1470155	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A		G
ss320476346	CHEV_2_119445220	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33741488					SNP	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119449965 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12123	CpG island 12123			555 bp distal
Nusap1	nucleolar and spindle associated protein 1			Intron
				Noncoding-Transcript-Variant
Oip5	Opa interacting protein 5			1015 bp upstream
Rr397233	regulatory region 397233			728 bp downstream
Rr563550	regulatory region 563550			1176 bp distal
Rr563551	regulatory region 563551			1175 bp distal
Rr563552	regulatory region 563552			757 bp distal
Rr563553	regulatory region 563553			478 bp proximal
Rr563554	regulatory region 563554			1446 bp proximal
Tssr19645	transcription start site region 19645			747 bp downstream
Tssr25824	transcription start site region 25824			974 bp upstream