rs33739242 SNP Detail

Summary

• ID
  rs33739242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106975642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGAATG AAATGATTAA
  TAATAATAAT AAAAGAAAAA ATTTTAAAAT GTTCTCACCA GAAGCAACTG CTCAATCTTA
  AACTTCCAAG ATTTCAGAAC TATGAGTGAA ATAAGCCTTT TTTCTTTATA AGTCATCAAA
  ACTTTCATAG TCTATTATAG CAACAAATGA AAGTAATCAA TTTATGAAGG ACACACATGC
  R
  TCTACACACA TACACACATG AAATAAAATA TAAAATGCAG CACATGCCAG GAAAGCTGTT
  ACTATGTTAC ATGTTATCAG GTGGAACTCT CAACAGAAAG GAGTCAGTCA CAGAAAGCTG
  CATGGTTATT GATGCTCTAG CCAAGCAACT GGAAAACAGT GTGCTGGTTT CACTTCATGA
  CCTTTGTCTA TATAACATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46850950	NES10702100	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33739242					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46850950	NES10702100	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106975642 () rs orientation: forward

Symbol	Name	Function Class
Gm38712	predicted gene, 38712	within coordinates
Rr397929	regulatory region 397929	724 bp downstream
Rr582893	regulatory region 582893	1667 bp distal
Rr582894	regulatory region 582894	1166 bp distal
Tssr35010	transcription start site region 35010	1613 bp upstream