rs33738754 SNP Detail

Summary

• ID
  rs33738754
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121130691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC CCTACTGAGA AGATTGTGCG
  W
  GTGCTTTTCC CGGGAAATGC TCCCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45314979	mCV23081969	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss147383234	ENSMUSSNP5655029	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320482581	CHEV_2_121125946	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33738754					SNP	T	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121130691 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12154	CpG island 12154			354 bp distal
Map1a	microtubule-associated protein 1 A			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
Rr563802	regulatory region 563802			1724 bp distal
Tssr19741	transcription start site region 19741			1602 bp downstream
Tssr19742	transcription start site region 19742			709 bp downstream
Tssr19743	transcription start site region 19743			153 bp upstream
Tssr19744	transcription start site region 19744			423 bp upstream
Tssr19745	transcription start site region 19745			732 bp upstream
Tssr25921	transcription start site region 25921			457 bp downstream
Tssr25922	transcription start site region 25922			1055 bp downstream