rs33736466 SNP Detail

Summary

• ID
  rs33736466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:67396496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACCGCCTT GTAATCTTGG GGTGCTTACA AGCTCCTAGT
  GGCCGGAGCA TCCGGACAAG GATGTTTGGG ACCTAGACAG CGAGTTCTGC TGCCTGGCCA
  R
  GCTGATGCTC GCGCCGGTGC GGCTTCAGCT CCTGCCTTCT GGCTTAGGCA GTGACAGACT
  TTGACAGCGC GTGGATGGCA TTGTGTGTGA GAGAGTGTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45315505	mCV22605987	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss146721152	ENSMUSSNP1812935	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs33736466					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67396496 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B3galt1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1			Intron
				Noncoding-Transcript-Variant
Cpgi11705	CpG island 11705			within coordinates
Rr558220	regulatory region 558220			within coordinates
Rr558221	regulatory region 558221			248 bp distal
Tssr18010	transcription start site region 18010			379 bp downstream