rs33734266 SNP Detail

Summary

• ID
  rs33734266
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22494826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTTGGCT GTGAAAGGCA
  GGGAAGGCTG AGGGTGTGGG GCCCTGACTA TCAGAAACTT CCCCTTTGGT TTCTAACGTT
  GTAAATACCT TTTCTCAAAG AGCTGTAAAA GGAAAATACT GGTACCTACC TATTTACTTA
  CAATTTAGAG AATACATACT GTTTAAGAAG ACAAAATGAT GTGGAAGTAT AAGATGCCCT
  R
  ATTCTTTGGT GGAACCAGGC TCTGCCAAAA ACCAGTGTCA GATGAGGCAG GGTCTAAGCT
  GTGGAAACAG CTGAGGAAGA GATCTGAGGA TCAGCCTAGC CTGGTCCACC GCAAAAATCG
  GGCGAATATT GTACACTCAA AGCTCTTTCC CAAAGATGCC ATGAATGTGG AGGAAAGCAG
  GGTGGGGTGA GTGGAATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47834500	NES11683015	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33734266					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47834500	NES11683015	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22494826 () rs orientation: forward

Symbol	Name	Function Class
Rr379050	regulatory region 379050	within coordinates
Rr627113	regulatory region 627113	562 bp distal
Rr627114	regulatory region 627114	697 bp distal
Rr627115	regulatory region 627115	1832 bp proximal