rs33729395 SNP Detail

Summary

• ID
  rs33729395
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106697658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGACTGA GTGTTCTCTC
  TTAGGCTCAG ATAGTCAACT GTTCCTCAGT GAACTTGCAG AGGCTTCCAC TCCCAGCCTA
  TTCTAAGCTG GTTTCTGGAA GCTAAAGAAG GTCTGACACA CCAATCTGAG TTCTGGTGAA
  CTTTACAGTA ATTTGAGTGA TATTTCCTGG CCATAGAACA GTGCTTCTCA ATTGAAGCAG
  M
  AACTACAAAA TACCCGTGGG TCTGTTTCTG TGTATGTGTC CCCACCGTTT GACCACAAAC
  TATACTACTA AACCATACTG ACCAAGCCAG CATGGTACTG GAATGAAACC ATACTTGTAG
  ATCAATATAG CATAGTAGAG GACACAGAGA TAAACTTGTG TAGGATTGAA TATCTACTTT
  TGGACAAAGG TGTATCAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46849009	NES10709634	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33729395					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46849009	NES10709634	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106697658 () rs orientation: forward

Symbol	Name	Function Class
Cd53	CD53 antigen	193 bp upstream
Rr397926	regulatory region 397926	245 bp downstream
Rr582867	regulatory region 582867	1261 bp distal
Rr582868	regulatory region 582868	204 bp distal
Rr582869	regulatory region 582869	within coordinates
Tssr1003	transcription start site region 1003	1794 bp downstream
Tssr31143	transcription start site region 31143	1571 bp downstream
Tssr31144	transcription start site region 31144	1534 bp downstream
Tssr31145	transcription start site region 31145	1460 bp downstream
Tssr31146	transcription start site region 31146	166 bp downstream
Tssr35000	transcription start site region 35000	1763 bp upstream
Tssr35001	transcription start site region 35001	314 bp upstream
Tssr35002	transcription start site region 35002	297 bp upstream
Tssr35003	transcription start site region 35003	270 bp upstream
Tssr35004	transcription start site region 35004	258 bp upstream
Tssr35005	transcription start site region 35005	202 bp upstream
Tssr35006	transcription start site region 35006	188 bp upstream
Tssr35007	transcription start site region 35007	156 bp upstream