rs33728822 SNP Detail

Summary

• ID
  rs33728822
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125699366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAAAGATT CTCATTTTCA TTCCTACACT GTACTTTTAA
  GTTAATCCCA GTGCTAATAT TCATTTATCT AAAAGTTCAT GTATTTCATA GACTATTAGG
  W
  AAGGAGGTAA GTGAAAATTT TAAAAACACT ACCAGCTAAA ATTACAAACA TTCAAAAGAA
  ATATCTGACA ATTTAAAAAC TACTTGTAAT GGAAACAAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45313927	mCV23888328	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	T
ss147488951	ENSMUSSNP532633	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33728822					SNP	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125699366 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cops2	COP9 signalosome subunit 2			Intron
				Noncoding-Transcript-Variant
Cpgi12203	CpG island 12203			1029 bp proximal
Galk2	galactokinase 2			1663 bp upstream
Rr367292	regulatory region 367292			1506 bp upstream
Rr564285	regulatory region 564285			465 bp proximal
Rr564286	regulatory region 564286			869 bp proximal
Rr564287	regulatory region 564287			1583 bp proximal
Tssr19907	transcription start site region 19907			1717 bp upstream
Tssr26026	transcription start site region 26026			1539 bp downstream
Tssr26027	transcription start site region 26027			1752 bp downstream