rs33728688 SNP Detail

Summary

• ID
  rs33728688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:24838844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAAATA GGAAACTGAG
  TTACCTGACC CTAACAGCTA AACCTCAAGG AAATACAAGT ACTAAGATGA TGAACCATAA
  ATTGGAACTT TATCCTTTTA ATGATAATTT GTAAAAGACA GAAGAAATTA TTTATAAATT
  GTAGGGATTT ATTTGAATAT TCATCTTTTA TCCACCTCAG TACTTTTAAC TCTTGGCTTT
  Y
  ACTAGAAAAA CACTATATGT GATATATATA TATATATATA TATATATATA TATATATATA
  CAACATTGAT GCCTTCAAAT AATCTGCATA ATATGTTTTC AGGCTTAAAA TGCAAAATAT
  AATTTTATAA GTAGTCTATA TAAGCAATAA TAAAGGCCAG CAGTTAGAAA TTATCTTCAT
  CCAATAGATG ACTGTGAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss46849002	NES10843823	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs33728688					SNP	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46849002	NES10843823	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:24838844 () rs orientation: forward

Symbol	Name	Function Class
Naaladl2	N-acetylated alpha-linked acidic dipeptidase-like 2	Intron
Rr574270	regulatory region 574270	1069 bp distal
Rr574271	regulatory region 574271	856 bp distal
Tssr32764	transcription start site region 32764	1073 bp upstream
Tssr32765	transcription start site region 32765	1059 bp upstream