rs33727880 SNP Detail

Summary

• ID
  rs33727880
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106696964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAATACA TGAAGTACAT
  TGCAGAACAC CTATGTTGCA GGTTTTTTGT ATCTATCTTA TATCAAAACA TGACATTCTC
  AGCACTAACT TTCCTTTAAA ATGTTTTCAA ACAAAGACAA CATGTCTTCT GGCTACTGTT
  CTAAATCACT CTGGTTATGA TTTTCCTCCC TGCTCTAAAA TGAAACTTCA AGTTTTTGAA
  K
  AAAAAACAAC ATAGAAGATC TCCCCAATTT CATCTCATCT CACCTCAAAA ACTTCAAGCA
  TTAGAAACCA CCATATACAG TAAGCAATTC AAGTGGCATA ATAATGTAAG CTTATGAATA
  CTTAGGCCCA AAGAGATATC AGAAAATAAA ACACCAATTA AATCAAAGTA TTTCTAGCCC
  AGTTGCCTAA GGGAAGTGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46848994	NES10709629	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33727880					SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848994	NES10709629	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106696964 () rs orientation: forward

Symbol	Name	Function Class
Cd53	CD53 antigen	Intron
Rr397926	regulatory region 397926	149 bp upstream
Rr582867	regulatory region 582867	567 bp distal
Rr582868	regulatory region 582868	178 bp proximal
Rr582869	regulatory region 582869	491 bp proximal
Tssr1002	transcription start site region 1002	1621 bp upstream
Tssr1003	transcription start site region 1003	1100 bp downstream
Tssr31142	transcription start site region 31142	1380 bp downstream
Tssr31143	transcription start site region 31143	877 bp downstream
Tssr31144	transcription start site region 31144	840 bp downstream
Tssr31145	transcription start site region 31145	766 bp downstream
Tssr31146	transcription start site region 31146	516 bp upstream
Tssr34999	transcription start site region 34999	1530 bp upstream
Tssr35000	transcription start site region 35000	1069 bp upstream
Tssr35001	transcription start site region 35001	355 bp downstream
Tssr35002	transcription start site region 35002	386 bp downstream
Tssr35003	transcription start site region 35003	399 bp downstream
Tssr35004	transcription start site region 35004	425 bp downstream
Tssr35005	transcription start site region 35005	481 bp downstream
Tssr35006	transcription start site region 35006	495 bp downstream
Tssr35007	transcription start site region 35007	527 bp downstream