rs33727111 SNP Detail

Summary

• ID
  rs33727111
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106696229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATATCTAA AAGCAAAATA
  ACCTTAACTG GCCCACACAG GAAACCACAT TTCAGTTTGG CATCTGCTCT TAATCAACCA
  GTTTCAAAGC AGTGAAGATT TGGATCGAGA TTGAGAAAGC AAAACATTGC TCACACAGCA
  GATAAAATTC TTCTCTGGCT CAATCTTCTA ATAGATATGA TTACCAAGAA AAGCTCCTCA
  W
  GGAAAAAACT ATTACTGGGC AAATTCTCCA TTCTTCTTCA TTTCTCCTCT GTATCAACAG
  TATACTGTCA GACATCAAAG GGTGCCTAAC CCATGGTTTT TAACTTAGTT CACTTAGGTC
  ACTATTTATA AACATAAGGT TTAGTAGCCT CTGAGGGTGG CTCTGACAAG CTGCAACTAA
  CTCCCAATCA TCTCCCTTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46848985	NES10709626	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33727111					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848985	NES10709626	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106696229 () rs orientation: forward

Symbol	Name	Function Class
Cd53	CD53 antigen	Intron
Rr397926	regulatory region 397926	884 bp upstream
Rr582867	regulatory region 582867	within coordinates
Rr582868	regulatory region 582868	913 bp proximal
Rr582869	regulatory region 582869	1226 bp proximal
Tssr1002	transcription start site region 1002	886 bp upstream
Tssr1003	transcription start site region 1003	365 bp downstream
Tssr31142	transcription start site region 31142	645 bp downstream
Tssr31143	transcription start site region 31143	142 bp downstream
Tssr31144	transcription start site region 31144	105 bp downstream
Tssr31145	transcription start site region 31145	31 bp downstream
Tssr31146	transcription start site region 31146	1251 bp upstream
Tssr34999	transcription start site region 34999	795 bp upstream
Tssr35000	transcription start site region 35000	334 bp upstream
Tssr35001	transcription start site region 35001	1090 bp downstream
Tssr35002	transcription start site region 35002	1121 bp downstream
Tssr35003	transcription start site region 35003	1134 bp downstream
Tssr35004	transcription start site region 35004	1160 bp downstream
Tssr35005	transcription start site region 35005	1216 bp downstream
Tssr35006	transcription start site region 35006	1230 bp downstream
Tssr35007	transcription start site region 35007	1262 bp downstream