rs33727110 SNP Detail

Summary

• ID
  rs33727110
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:24837844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTCTCT CCCATTTTAT
  TCTCTCTTTT TAAAGGGGGC CAAGCAGTTT CGGGCTGTGT CAGCTACCCT GGAAGCCTAG
  CGACCTTCTG ACTTGCTACA GTAGTATTGT AACAGTACAC TACCGGCTTT CTTCTGTGAA
  TAATTACCAC TCTGCTTCCT GAGTTACCTG GCCTTGCAGG ACCTGTTTTA CTATGAAGTG
  M
  GCTAACGTGC TTTCTCCCAA TGTCCTGTTA CTAAACCGCT TCACAAAACA CGGCTTTGTT
  TCAGTTTTGA TATTAACTTT TGCCCTGAGT GTTGGCAGTA TTTCCAACAC TACATAAGTC
  ACAGGCAAAT TTTCGTTCTG TTTTTTTTTT CTTTTTCTTT TTTTCTTTTA TTTGTAGTGT
  TCCTAACCTG TTTCAAAATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss46848984	NES10844002	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs33727110					SNP	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848984	NES10844002	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:24837844 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Naaladl2	N-acetylated alpha-linked acidic dipeptidase-like 2			Intron
				mRNA-UTR
Rr574270	regulatory region 574270			69 bp distal
Rr574271	regulatory region 574271			within coordinates
Tssr32764	transcription start site region 32764			73 bp upstream
Tssr32765	transcription start site region 32765			59 bp upstream