rs33726821 SNP Detail

Summary

• ID
  rs33726821
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106789316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTCTGCC TGCAAATCAG
  AATGTAGCTC TCTGCTACCT CTCTAGTATT GTACCTGCCT GTAGGCTGCC ATACTTCTGC
  CATGATAATG GACTAAACCT CTGAAACTGT AAGCCAGCTG CCAGCCCCAA TTAAATGTTT
  TCTTTCATAG TGTTGCTTTG ATCGTGGTGT TTTAAATACA ACAATATGAG GGCTTTAAGA
  K
  AGTTTCATGT ATATGAATAA TGCAAGGTTG GCAAAAAGGT TATACTTAGT GATTGATATA
  TTATGAGGAA AATTCAATTT TTTATTATTT GTTTAATGGT CATCTAGCTT CTTTTTCTAT
  TAACCTCTTT ATGTTTACCT TACACTATGA AGTTACAAAC TCCATGTTCA TTCTGAGGTT
  ATAAAATATT CTATAATTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46849363	NES10708147	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33726821					SNP	T	T	T	T	T	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46849363	NES10708147	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106789316 () rs orientation: forward

Symbol	Name	Function Class
Rr582871	regulatory region 582871	1708 bp distal
Rr582872	regulatory region 582872	1790 bp distal