rs33726411 SNP Detail

Summary

• ID
  rs33726411
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:24837109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTAAAC AACCTTCCAG
  TGTGAATGAT AAAATCATTG TGAAAAATAT TAAGAGAAAA TATTTACCTA TTCAATAAAC
  TTAAAATAAA TAAAAATTTT ACTTAAAACA CAACAGGGAA ATGTGTGAGC CACCTCGTAT
  TTGTTTCCAA CAAATGAACC ATGGCTGCCT AGTGTAGCCA AAGTCAACAG AGCCAAGCCT
  W
  CAGAGGGCAA AGGTATTTGA TTAAGTAAGA CATGTAAAAT AAGCCTCTGT GCCAGCTGAT
  AAGCTCGGCT GCTGGGATCC TGTTTTCTTC ATTTAAACAC TGGAGTTACA TTGATTACAA
  TAACACTTAA CTTGTAAACC TGCCTGATAG TGATGACAGT CGCTGATTAC AAACAAAACG
  TCCACGTGTA CAAGCAAAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46848975	NES10843999	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs33726411					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848975	NES10843999	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:24837109 () rs orientation: forward

Symbol	Name	Function Class
Naaladl2	N-acetylated alpha-linked acidic dipeptidase-like 2	Intron
Rr574270	regulatory region 574270	within coordinates
Rr574271	regulatory region 574271	667 bp proximal
Tssr32764	transcription start site region 32764	616 bp downstream
Tssr32765	transcription start site region 32765	663 bp downstream