rs33725611 SNP Detail

Summary

• ID
  rs33725611
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106454241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAGCTT CAAATCTCAT
  CGAATGCCAA TAGTTTTAAA TTGGTAATGC TCCAAATGTC TTATACAGTT TCCTTGTGTT
  TGAGCCAGTC AATTCAACAC ACATTCTGAA CACATTCCTG ACAGTTGTAA AGTAGAAAGG
  AAATATTCTA ACAACTTACA AAGTTCCTAT ACTCGTTGAA AACTGACTAT GAATTTGCCT
  M
  CTGCTGCAAT AGACGTTGCC TGGTGAGTTA GAGTTTTAGC AATGCCATAT ATTCAACAGC
  AATGATACAA CATTGGTAAA AACTGGTATC AAAATGCCAA GCATCAAACT GGAAAACTCA
  AACTCGGTAA AATGTAAAGC TTGAGGTTCA GCCAAGCATT CCTGGGAACA CAGGCAAAAA
  CCCCAGCAAT CTCCTTCTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46848319	NES10713741	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33725611					SNP	C	C	C	C	C	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848319	NES10713741	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106454241 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cept1	choline/ethanolaminephosphotransferase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13666	CpG island 13666			232 bp proximal
Dram2	DNA-damage regulated autophagy modulator 2			873 bp upstream
Rr375539	regulatory region 375539			307 bp upstream
Rr582853	regulatory region 582853			1686 bp distal
Rr582854	regulatory region 582854			954 bp distal
Rr582855	regulatory region 582855			within coordinates
Rr582856	regulatory region 582856			647 bp proximal
Rr582857	regulatory region 582857			958 bp proximal
Tssr31114	transcription start site region 31114			1026 bp downstream
Tssr31115	transcription start site region 31115			772 bp upstream
Tssr31116	transcription start site region 31116			802 bp upstream
Tssr31117	transcription start site region 31117			897 bp upstream
Tssr34980	transcription start site region 34980			753 bp upstream
Tssr34981	transcription start site region 34981			639 bp downstream
Tssr34982	transcription start site region 34982			657 bp downstream
Tssr34983	transcription start site region 34983			777 bp downstream
Tssr34984	transcription start site region 34984			801 bp downstream