rs33725605 SNP Detail

Summary

• ID
  rs33725605
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106453353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCCATTAC TTAAAGTAAA ATACTAATGG CTGAGACTAT
  TAGGGAAGGG ACCATAGAAG AAAAGAGAAA GAAAAACAAG AGAAAGAAAA ATAAATAAAT
  W
  AATAGGATCA TAGGAATAAG TTCAGCATTA TTTAACAAAT GATACATAAA ACATGTTTGT
  CTGGGGGCAG GGGGGCTTTT CTGTACTCAG AAGCAGACAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ
ss46848313	NES10713863	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ
rs33725605					SNP	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848313	NES10713863	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106453353 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cept1	choline/ethanolaminephosphotransferase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13666	CpG island 13666			1120 bp proximal
Dram2	DNA-damage regulated autophagy modulator 2			1761 bp upstream
Rr375539	regulatory region 375539			1195 bp upstream
Rr582853	regulatory region 582853			798 bp distal
Rr582854	regulatory region 582854			66 bp distal
Rr582855	regulatory region 582855			821 bp proximal
Rr582856	regulatory region 582856			1535 bp proximal
Rr582857	regulatory region 582857			1846 bp proximal
Tssr31114	transcription start site region 31114			138 bp downstream
Tssr31115	transcription start site region 31115			1660 bp upstream
Tssr31116	transcription start site region 31116			1690 bp upstream
Tssr31117	transcription start site region 31117			1785 bp upstream
Tssr34980	transcription start site region 34980			124 bp downstream
Tssr34981	transcription start site region 34981			1527 bp downstream
Tssr34982	transcription start site region 34982			1545 bp downstream
Tssr34983	transcription start site region 34983			1665 bp downstream
Tssr34984	transcription start site region 34984			1689 bp downstream