rs33725522 SNP Detail

Summary

• ID
  rs33725522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:24836352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATGTACC AGAGAAAGGG
  AACCAGCGTT AACATCTGGT ATTCATATTC TAGGACTCCA GTGTATTATT ATCCTTCAAA
  TAGAGTGTTG GGGGAGCTTT GTGTCTTCCA ACACTTATGT TCTACTTTGG AACTGTACCA
  GCATAGCATA GAAAGGGCTA TCACATGCCA ATAATAAATT TATGAGATGC TCTTATAATG
  Y
  AGGTATGTCT CTCATGCCCT TCCAATACTA TCATATACTT AGTTAATAAA ATAAATACAA
  ATAAACTATT TTCAAAAATC ATTCTCAATG ATACTTTTTG CCAAATGAGC CTTTTAAACT
  TTTTTCTCTT CAATTTGATT CATCACAGAA TGTTTTTATT AACTGTAATT GAGTACGTTC
  AAATAATAAC ATTTTATACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss46848966	NES10843996	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs33725522					SNP	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848966	NES10843996	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:24836352 () rs orientation: forward

Symbol	Name	Function Class
Naaladl2	N-acetylated alpha-linked acidic dipeptidase-like 2	Intron
Rr574270	regulatory region 574270	644 bp proximal
Rr574271	regulatory region 574271	1424 bp proximal
Tssr32764	transcription start site region 32764	1373 bp downstream
Tssr32765	transcription start site region 32765	1420 bp downstream